[gmx-users] genbox

leila separdar separdar.leila at gmail.com
Thu Apr 14 22:59:58 CEST 2011

I have .gro and .top of a nanoparticle at temperature 1K and I want to
add the simulation box some other atomes at temperature 300K. is there
any body knows how can I do it. I have  used (genbox -cp
nanoparticle.gro -ci otheratom.gro -p nanoparticle.top -o out) but it
add more than atomes than I expect for example if there is 600 other
atomes in otheratom,gro file this command add 2000 atomes to
simulation box and also nanoparticle.top does not update.
thanks in advance

More information about the gromacs.org_gmx-users mailing list