[gmx-users] Re: Trajectory visualization

[Erik Marklund]

Your results are not affected by isualization, are they? Just keep a 
copy of the original trajectory for analysis.

Erik

bharat gupta skrev 2011-04-15 07.08:
> Reduicng no. of frames means breaking the simulation into smaller 
> frames ... will it affect the result ??
>
> On Thu, Apr 14, 2011 at 10:06 PM, Mark Abraham 
> <Mark.Abraham at anu.edu.au <mailto:Mark.Abraham at anu.edu.au>> wrote:
>
>     On 15/04/2011 2:49 PM, bharat gupta wrote:
>
>         Hi,
>
>         I have done a simulation of 10ns but while viewing the
>         trajectory in VMD I am getting some problems. After loading
>         the .gro and .xtc file VMD stops working .. I used trjconv to
>         compress the file but VMD doesnot read frames from tat file...
>         How can I visualize the trajectories??
>
>
>     How do you mean "does not read frames from that file"? Can you
>     read an .xtc of one frame?
>
>     Maybe VMD is running out of memory. Use trjconv to reduce the
>     number of frames and try again.
>
>     Mark
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>
> -- 
> Bharat
> Ph.D. Candidate
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-- 
-----------------------------------------------
Erik Marklund, PhD student
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,    75124 Uppsala, Sweden
phone:    +46 18 471 4537        fax: +46 18 511 755
erikm at xray.bmc.uu.se    http://folding.bmc.uu.se/

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