[gmx-users] Re: Trajectory visualization
erikm at xray.bmc.uu.se
Fri Apr 15 11:41:03 CEST 2011
Your results are not affected by isualization, are they? Just keep a
copy of the original trajectory for analysis.
bharat gupta skrev 2011-04-15 07.08:
> Reduicng no. of frames means breaking the simulation into smaller
> frames ... will it affect the result ??
> On Thu, Apr 14, 2011 at 10:06 PM, Mark Abraham
> <Mark.Abraham at anu.edu.au <mailto:Mark.Abraham at anu.edu.au>> wrote:
> On 15/04/2011 2:49 PM, bharat gupta wrote:
> I have done a simulation of 10ns but while viewing the
> trajectory in VMD I am getting some problems. After loading
> the .gro and .xtc file VMD stops working .. I used trjconv to
> compress the file but VMD doesnot read frames from tat file...
> How can I visualize the trajectories??
> How do you mean "does not read frames from that file"? Can you
> read an .xtc of one frame?
> Maybe VMD is running out of memory. Use trjconv to reduce the
> number of frames and try again.
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