[gmx-users] how to prepare implicit solvent system??

[Justin A. Lemkul]

김현식 wrote:
> Dear experts,
> 
> hi, I'm using Gromacs for implicit solvent system, Can anybody let me 
> know hot to prepare the implicit solvent system??
> 

Just as you would any other system, except you don't need to define a unit cell 
full of water and ions.  pdb2gmx, grompp, mdrun.  There are benchmarks and 
example input files on the Gromacs site.

-Justin

> Thanks
> 

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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