[gmx-users] pdb2gmx segmentation fault

[Justin A. Lemkul]

Matthew Zwier wrote:
> Thanks.  I'm no Sun expert, so I'd have to echo Justin's request for
> the precise sequence of commands you used to install GROMACS and all
> dependencies.
> 

In addition, you can add -g to your CFLAGS to get debugging symbols, then 
execute pdb2gmx via a debugger like gdb.  This should show where the problem is 
coming from.  I have also never used Sun, so I won't be able to comment directly 
on that, either.

-Justin

> On Wed, Apr 20, 2011 at 2:51 PM, Ragothaman Yennamalli
> <ragothaman at gmail.com> wrote:
>> It is a SunOS operating system, 64 bit with Eight 6-core AMD opteron CPUs.
>>
>> On Wed, Apr 20, 2011 at 11:34 AM, Matthew Zwier <mczwier at gmail.com> wrote:
>>> I've never seen the -D_POSIX_PTHREAD_SEMANTICS before.  What caused
>>> you to need to define that flag?
>>>
>>> Also...what hardware (cpu) and operating system (linux? what distro?
>>> what version?) are you using?
>>>
>>> Matt Z.
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>>> Ragothaman M Yennamalli, Ph.D.
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-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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