[gmx-users] No such moleculetype Na

m_p mp.2egy at gmail.com
Sun Dec 11 15:13:50 CET 2011


Did you try NA or CL.
All caps worked for me last time I used this.
Egy


On Dec 11, 2011, at 4:17 AM, Setare Jiji wrote:

>
> Hi,
> Thanks for your responding.
>
> I checked my ions.itp file in which file sodium and chlorine ions  
> are as Na and Cl form.
>
> Thus, I used genion as follows:
>
> genion -s ions.tpr -o 1AKI_solv_ions.gro -p topol.top -nname Cl -nn  
> 8 -pname Na
>
> Unfortunately, I encountered same fatal error.
>
> any help will highly appreciated.
>
> -- 
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search 
>  before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20111211/bcaf815e/attachment.html>


More information about the gromacs.org_gmx-users mailing list