[gmx-users] Re: Force field for polymer molecule - tips (Mark Abraham)

Mark Abraham Mark.Abraham at anu.edu.au
Wed Dec 14 06:43:06 CET 2011


On 14/12/2011 12:53 PM, Jernej Zidar wrote:
> Hi Mark.
>>> How will pdb2gmx "know" it has to parse the monomeres.rtp file?
>> It can't. You must add to an existing .rtp file.
> That's a problem (and a negative surprise), because I can't just add a
> new residue to the aminoacids.rtp in Charmm27.ff folder. Charmm27 and
> CGenFF are two different things, though they can be used together.

OK, well make a copy as Tsjerk suggests, and use whatever name you like.

Mark



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