[gmx-users] MD simulation of Glycoproteion

[Yun Shi]

2011/12/14 陈应广 <525342307 at qq.com>

>
> **
>
>
>  Dear gromacs users
>
>      I used Gromacs in order to get a MD simulation of Glycoproteion.now I
> have got the Glycoproteion's PDB file,When I want to MD by GMX,it gave a
> Warnning:Fatal error: Residue "...."not found in residue topology database.
> And I know it was because of the force field,I want to know which force
> field should be choose in GMX,And where I can get the force field?? *Any
> suggestions?
> *
>

I guess you have to check the residue names, especially those glyco parts,
which are probably not in the force field you chose.


> ** That's all.
>
>
>     Thank  you
> **
>
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