[gmx-users] mdrun_mpi -rerun bonded interactions
Vasileios Tatsis
basilhs_t at yahoo.gr
Thu Dec 15 09:42:30 CET 2011
Dear GRomacs users,
I am using the -rerun option of mdrun to read the coordinates of a trajectory and to compute the potential energy of a molecule during MD.
This operation when performed in parallel, using mdrun_mpi, the energy of the bonded interactions is not computed. But using one core, with the option -nt 1, all interactions are computed.
I am using the md-vv integrator.
Thanks in advance for your help
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