[gmx-users] pressure coupling
mohammad agha
mra_bu at yahoo.com
Sat Dec 17 06:58:15 CET 2011
Dear GROMACS Users
I have a warning after doing pr.mdp as followed, I read errors in GROMACS site and checked mailing list, but my warning is only step1 and after that equilibration is run normally till end.
5000000 steps, 150000.0 ps.
step 0
Step 1 Warning: pressure scaling more than 1%, mu: 1.04679 1.04679 1.04679
Step 1 Warning: pressure scaling more than 1%, mu: 1.04679 1.04679 1.04679
my pr.mdp about pressure coupling is:
pcoupl = berendsen
pcoupltype = isotropic ; uniform scaling of box vectors
tau_p = 4 ; time constant, in ps
ref_p = 1.0 ; reference pressure, in bar
compressibility = 4.5e-5 ;isothermal compressibility of water, bar^-1
I work in Martini Coarse-Grained and my time step is 0.03 ps. I increased tau_p but my warning increased to step 1 and step 11, I think this warning since it is only in initial steps isn't important, is my idea right?
Best Regards
Sara
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