[gmx-users] which may caused this error

lina lina.lastname at gmail.com
Tue Dec 20 05:24:10 CET 2011


Hi,

I have very high frequency meeting below error:

[hostname-c06:07555] *** Process received signal ***
[hostname-c06:07555] Signal: Segmentation fault (11)
[hostname-c06:07555] Signal code: Address not mapped (1)
[hostname-c06:07555] Failing at address: 0x2aaab3248120
[hostname-c06:07555] [ 0] /lib64/libpthread.so.0 [0x399440e7c0]
[hostname-c06:07555] [ 1]
/home/lina/lib/libgmx_mpi.so.6(nb_kernel_allvsallgb_sse2_single+0x1cc1)
[0x2b7249a92d61]
[hostname-c06:07555] [ 2]
/home/lina/lib/libgmx_mpi.so.6(do_nonbonded+0xe8) [0x2b72499d99d8]
[hostname-c06:07555] [ 3]
/home/lina/lib/libmd_mpi.so.6(do_force_lowlevel+0x32f)
[0x2b724931c7bf]
[hostname-c06:07555] [ 4]
/home/lina/lib/libmd_mpi.so.6(do_force+0xbf5) [0x2b72493766c5]
[hostname-c06:07555] [ 5] mdrun_g_f(do_md+0x54ba) [0x41b1ca]
[hostname-c06:07555] [ 6] mdrun_g_f(mdrunner+0x1169) [0x415ae9]
[hostname-c06:07555] [ 7] mdrun_g_f(main+0x9c7) [0x41c027]
[hostname-c06:07555] [ 8] /lib64/libc.so.6(__libc_start_main+0xf4)
[0x3993c1d994]
[hostname-c06:07555] [ 9] mdrun_g_f(do_cg+0x191) [0x407e39]
[hostname-c06:07555] *** End of error message ***
--------------------------------------------------------------------------
mpirun noticed that process rank 52 with PID 7555 on node hostname-c06
exited on signal 11 (Segmentation fault).

I have made a clear installation with 4.5.5.

just please feel free to give some wild guess about what's the possible reasons,

Thanks with best regards,



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