[gmx-users] Fw: modifying the mutated DNA parameters

[Mark Abraham]

On 12/25/2011 6:04 PM, banafsheh mehrazma wrote:
> Dear Mark;
> Thank you for your instant reply. You are right, but in my case, there 
> is a residue  8-OxoG  (oxidized G). As you know, in all of the force 
> fields in Gromacs package, G,C,A and T are known. In your opinion, 
> what should I do in case of 8-OxoG, to obtain parameters needed for 
> this new residue?
>

You're assuming that you need a new atom type and/or bonded parameters 
for your force field. You have to determine whether that is true, yet.

Mark

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