[gmx-users] make error "Makefile:347: recipe for target `all-recursive' failed" for Gromacs-4.5.5
Mark Abraham
Mark.Abraham at anu.edu.au
Sat Dec 31 00:30:18 CET 2011
On 31/12/2011 3:13 AM, Rashek Kazi wrote:
> I am currently attempting to install gromacs-4.5.5. on a winXP 32bit
> system through Cygwin. I had previously installed gromacs-4.5.4
> without any issue but now I get an error during Make that reads like
> the following...
Yep. See
http://lists.gromacs.org/pipermail/gmx-users/2011-November/065886.html
for explanation and work-around for 4.5.5.
Mark
>
> mv -f .deps/pthreads.Tpo .deps/pthreads.Plo
> /bin/sh ../../../libtool --tag=CC --mode=compile cc
> -DHAVE_CONFIG_H -I. -I..
>
>
> /../../src -I/usr/include/libxml2 -I../../../include
> -I/usr/local/include -O3
>
>
> -fomit-frame-pointer -finline-functions -Wall -Wno-unused
> -msse2 -funroll-all-lo
>
>
> ops -std=gnu99 -fexcess-precision=fast -I./include -MT
> numa_malloc.lo -MD -MP -
>
>
> MF .deps/numa_malloc.Tpo -c -o numa_malloc.lo numa_malloc.c
> cc -DHAVE_CONFIG_H -I. -I../../../src -I/usr/include/libxml2
> -I../../../include
>
>
> -I/usr/local/include -O3 -fomit-frame-pointer -finline-functions
> -Wall -Wno-unu
>
> sed
> -msse2 -funroll-all-loops -std=gnu99 -fexcess-precision=fast
> -I./include -MT
>
>
> numa_malloc.lo -MD -MP -MF .deps/numa_malloc.Tpo -c numa_malloc.c
> -DPIC -o .li
>
>
> bs/numa_malloc.o
> numa_malloc.c:117:73: error: expected ')' before 'Processor'
> numa_malloc.c:118:78: error: expected ')' before 'ProcNumber'
> numa_malloc.c:121:45: error: expected '=', ',', ';', 'asm' or
> '__attribute__' be
>
>
> fore 'smalloc_GetNumaProcessorNodeEx'
> numa_malloc.c:122:45: error: expected '=', ',', ';', 'asm' or
> '__attribute__' be
>
>
> fore 'smalloc_GetCurrentProcessorNumberEx'
> numa_malloc.c: In function 'InitNumaHeapSupport':
> numa_malloc.c:151:5: error: 'smalloc_GetCurrentProcessorNumberEx'
> undeclared (fi
>
> rst
> use in this function)
> numa_malloc.c:151:5: note: each undeclared identifier is reported only
> once for
>
> each
> function it appears in
> numa_malloc.c:151:44: error: 'func_GetCurrentProcessorNumberEx_t'
> undeclared (fi
>
> rst
> use in this function)
> numa_malloc.c:151:79: error: expected ';' before 'GetProcAddress'
> numa_malloc.c:152:5: error: 'smalloc_GetNumaProcessorNodeEx'
> undeclared (first u
>
>
> se in this function)
> numa_malloc.c:152:39: error: 'func_GetNumaProcessorNodeEx_t'
> undeclared (first u
>
>
> se in this function)
> numa_malloc.c:152:69: error: expected ';' before 'GetProcAddress'
> numa_malloc.c: In function 'ReturnHeapHandle':
> numa_malloc.c:246:5: error: 'PROCESSOR_NUMBER' undeclared (first use
> in this fun
>
> ction)
> numa_malloc.c:246:22: error: expected ';' before 'CurrentProcessorNumber'
> numa_malloc.c:285:5: warning: implicit declaration of function
> 'smalloc_GetCurre
>
>
> ntProcessorNumberEx'
> numa_malloc.c:285:42: error: 'CurrentProcessorNumber' undeclared
> (first use in t
>
> his
> function)
> numa_malloc.c:287:5: warning: implicit declaration of function
> 'smalloc_GetNumaP
>
>
> rocessorNodeEx'
> numa_malloc.c:324:9: warning: implicit declaration of function
> 'HeapSetInformati
>
> on'
> Makefile:332: recipe for target `numa_malloc.lo' failed
> make[4]: *** [numa_malloc.lo] Error 1
> make[4]: Leaving directory
> `/home/Administrator/gromacs-4.5.5/src/gmxlib/thread_
>
>
> mpi'
> Makefile:599: recipe for target `all-recursive' failed
> make[3]: *** [all-recursive] Error 1
> make[3]: Leaving directory `/home/Administrator/gromacs-4.5.5/src/gmxlib'
> Makefile:302: recipe for target `all-recursive' failed
> make[2]: *** [all-recursive] Error 1
> make[2]: Leaving directory `/home/Administrator/gromacs-4.5.5/src'
> Makefile:238: recipe for target `all' failed
> make[1]: *** [all] Error 2
> make[1]: Leaving directory `/home/Administrator/gromacs-4.5.5/src'
> Makefile:347: recipe for target `all-recursive' failed
> make: *** [all-recursive] Error 1
>
>
> I have no idea why this is and how to fix it, below are all of the
> steps I followed exactly as I did for 4.5.4.
>
> I first uninstalled fftw and manually installed fftw-3.3 for single
> precision with the following...
>
> ./configure --with-our-malloc16 --with-windows-f77-mangling
> --enable-shared --disable-static --enable-
> threads --with-combined-threads --enable-portable-binary
> --enable-float --enable-sse
> make
> make install
>
> I didn't see any glitches in there.
>
> I cd-ed into the gromacs-4.5.5 folder and did the following:
>
> export CPPFLAGS="-I/usr/local/include"
> export LDFLAGS="-L/usr/local/lib"
>
> ./configure --enable-cpu-optimization --enable-largefile
>
> make
>
> and that's where I'm stuck. I tried re-installing 4.5.4 and was unable
> to so I'm wondering if the updated fftw build is causing this. Any
> help would be appreciated. I'm not a linux user so please spell out
> explanations for me, sorry for the inconvenience. Thanks!
>
> --
> Rashek Kazi
> GS 2
> MSTP Candidate
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20111231/e351e03f/attachment.html>
More information about the gromacs.org_gmx-users
mailing list