Fw: [gmx-users] trjconv in martini

[mohammad agha]

Hi Tsjerk,

Thank you very much from your help.


Best Regards
Sara


________________________________
 From: Tsjerk Wassenaar <tsjerkw at gmail.com>
To: mohammad agha <mra_bu at yahoo.com>; Discussion list for GROMACS users <gmx-users at gromacs.org> 
Sent: Saturday, December 31, 2011 3:41 PM
Subject: Re: Fw: [gmx-users] trjconv in martini
 
Hi Sara,

> # Extract the first part of the trajectory
> trjconv -s md.tpr -f md.trr -n index.ndx -o 1a.xtc -e 19999

That should be -e 199999 :) But you can also use -e 200000. Probably
that is better. I first thought it'd be better to avoid a double
frame, but since trjcat is used to combine the parts again, it doesn't
matter.

Good luck,

Tsjerk



-- 
Tsjerk A. Wassenaar, Ph.D.

post-doctoral researcher
Molecular Dynamics Group
* Groningen Institute for Biomolecular Research and Biotechnology
* Zernike Institute for Advanced Materials
University of Groningen
The Netherlands
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