[gmx-users] Re: only one model is displayed

[Justin A. Lemkul]

There are two models.  VMD loads them as sequential frames such that they can be 
animated.  You'll see frame "0" and "1" in the VMD main window.

-Justin

Kwee Hong wrote:
> sorry, forgot to attached the file...
> 
> ------------------------------------------------------------------------
> *From:* Kwee Hong <jestan1985 at yahoo.com>
> *To:* gmx-users <gmx-users at gromacs.org>
> *Sent:* Friday, February 11, 2011 23:38:55
> *Subject:* only one model is displayed
> 
> Hi,
> 
> I've used g_confrms from gromacs-4.5.1 to compare two structures with 
> the following command line -
> 
>    g_confrms -f1 1OMB.pdb -f2 md.gro -o fit.pdb
> 
> fit.pdb is supposed to be the output file which would show the 2 
> structures superimposed on each other. But when I visualised it with 
> vmd. I can only see one structure.
> 
> Any idea what's going on? I hereby attached part of the generated fit.pdb.
> 
> All suggestions are welcomed.
> 
> Regards,
> Joyce
> 
> 

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================