[gmx-users] Regarding without solvent(water).

[Justin A. Lemkul]

ajaniharesh at gmail.com wrote:
> Hi everyone,
> 
> I am using gromacs 4.3 beta.
> 

There is no such version.  You probably shouldn't be any sort of beta version 
for any other purpose but to debug and test new features.

> I have query regarding solvent.
> 
> My protein is completly hydrophobic. So i dont want use a solvent(water). So how to neutralize protein without water.

Then what solvent do you intend to use?

> 
> Can i run gromacs without water ?

Sure, you can use any solvent you like.

> my simulation has charged residue in protein.
>  

Is the ionized state really the most likely form of a residue in a (presumably) 
hydrophobic solvent?

-Justin

> 
> 

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================