[gmx-users] Re: gmx-users Digest, Vol 85, Issue 209

[shiva birgani]

> Message: 1
> Date: Tue, 31 May 2011 06:56:16 -0400
> From: "Justin A. Lemkul" <jalemkul at vt.edu>
> Subject: Re: [gmx-users] flexiblity
> To: Discussion list for GROMACS users <gmx-users at gromacs.org>
> Message-ID: <4DE4C950.70704 at vt.edu>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
>
>
>
> shiva birgani wrote:
> > Dear all
> > I have simulated two different proteins (A and B). I need to compare
> > their flexibility. RMSF help to examine their flexibilty individually,
> > but I want to campare them with each other.
> > Do anybody know a solution to this? Would you please help me in this
> regard?
> >
>
> Is it not just a matter of comparing the RMSF between the two proteins?
>
> -Justin
>
> --
> ========================================
>
Dear Justin

Yes I want to compare them, but I am not sure that RMSF is appropriate test
to comparison, because two proteins are completely different in their amino
acid contents and numbers.

Regards
Shiva
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