[gmx-users] option -pbc in trjconv

[Mark Abraham]

On 3/06/2011 3:42 PM, Kavyashree M wrote:
> Dear users,
>
>      I wanted to ensure that the option of -pbc in trjconv is only for 
> visualization,
> and if I do all possible calculations with the original .xtc file 
> there wont be any
> problem.

-pbc is for any purpose you can think of. Some analyses of periodic 
simulations only make sense for some representations of the unit cell. 
Some don't. Read about the tool, think carefully, then act :-)

Mark