[gmx-users] gmx4.5.4 installation help

[Chandan Choudhury]

Thanks everyone. It helped me in installation.

--
Chandan kumar Choudhury
NCL, Pune
INDIA


On Fri, Jun 3, 2011 at 10:36 PM, Joshua L. Phillips <jphillips7 at ucmerced.edu
> wrote:

> Add --with-pic when configuring fftw.
>
> -- Josh
>
> On Thu, 2011-06-02 at 15:16 +0800, Jianguo Li wrote:
> > The error message already shows some hints. Try recompile FFTW with
> > -fPIC.
> > Jianguo
> >
> >
> >
> >
> > ______________________________________________________________________
> > From: Chandan Choudhury <iitdckc at gmail.com>
> > To: gmx-users <gmx-users at gromacs.org>
> > Sent: Thursday, 2 June 2011 15:03:03
> > Subject: [gmx-users] gmx4.5.4 installation help
> >
> > Hello gmx-users,
> >
> > I am trying to install gmx-4.5.4 on a HPC Linux cluster x86_64.
> > 1. I installed fftw 3.2.2
> >              ./configure --prefix /soft/sudip/abc/execs/fftw/
> > --enable-single --enable-threads
> > 2. Installing Gromacs : CPPFLAGS and LDFLAGS were written in bashrc
> > file
> >     a)         ./configure --prefix=/soft/sudip/abc/execs/gromacs/
> >        execute successfully without any complain.
> >     b) make
> >              /usr/bin/ld:
> /soft/sudip/abc/execs/fftw/lib/libfftw3f.a(apiplan.o): relocation
> R_X86_64_32 against `a local symbol' can not be used when making a shared
> object; recompile with -fPIC
> >              /soft/sudip/abc/execs/fftw/lib/libfftw3f.a: could not
> > read symbols: Bad value
> >              collect2: ld returned 1 exit status
> >              make[3]: *** [libmd.la] Error 1
> >              make[3]: Leaving directory
> > `/soft/sudip/abc/untar/gromacs-4.5.4/src/mdlib'
> >              make[2]: *** [all-recursive] Error 1
> >              make[2]: Leaving directory
> > `/soft/sudip/abc/untar/gromacs-4.5.4/src'
> >              make[1]: *** [all] Error 2
> >              make[1]: Leaving directory
> > `/soft/sudip/abc/untar/gromacs-4.5.4/src'
> >              make: *** [all-recursive] Error 1
> >
> >       shows problem.
> >
> > Couldnot understand the origin of problem. Kndly let me know if some
> > information is missing.
> >
> > Chandan
> >
> > --
> > Chandan kumar Choudhury
> > NCL, Pune
> > INDIA
> >
> > --
> > gmx-users mailing list    gmx-users at gromacs.org
> > http://lists.gromacs.org/mailman/listinfo/gmx-users
> > Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> > Please don't post (un)subscribe requests to the list. Use the
> > www interface or send it to gmx-users-request at gromacs.org.
> > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> --
> Joshua L. Phillips
> Ph.D. Candidate - School of Engineering
> University of California, Merced
> jphillips7 at ucmerced.edu
>
>
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20110604/522d194d/attachment.html>