[gmx-users] reg hydrophobicx interaction

[Justin A. Lemkul]

vidhya sankar wrote:
> Dear justin Thank u for your reply
> 
> Is there is any tool  to monitor the hydrophobic
> interactions between protein and any other ligand, or even within protein
> protein complexes?  Also i want identify the residue which are responsible for hydrophobic interaction of my protein
> I sht ere is any tool?
> 

g_mindist -on with a suitable index group (or groups) will give you the number 
of hydrophobic contacts.

-Justin

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================