[gmx-users] g_confrms and superimposed structures

leila karami karami.leila1 at gmail.com
Mon Jun 13 13:39:25 CEST 2011


Dear gromacs users

I need a figure of superimposed structures.

I used g_confrms -f1 1.pdb -f2 2.pdb -o fit.pdb  to obtain superimposed
structures.

when I see fit .pdb using VMD, only 1 structure is seen where as I want to
have 2 structures simultaneously.

Should I use another commands or flags?

any help will highly appreciated.




-- 

Leila Karami
Ph.D. student of Physical Chemistry
K.N. Toosi University of Technology
Theoretical Physical Chemistry Group
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