[gmx-users] Trajectory and ED - (not old question again)

[Kavyashree M]

Dear users,

   I did ED analysis for one of the trajectories,
when I visualised the trajectory along the first
five eigen vectors using g_nmtraj it does not
show much movements. It was a simulation of
100 ns.
My doubt is when I visualise the trajectory in
pymol calculated just after simulation I could
observe large movements in certain regions.
same regions do have movements in ED
trajectory also but not as large as this.
Why is this?

Thank you
With Regards
M. Kavyashree
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20110622/25496797/attachment.html>