[gmx-users] ED - Projecting on an eigenvector

[Tsjerk Wassenaar]

Did you make the molecules whole and removed jumps (in case of a multimer)
prior to filtering?

Cheers,

Tsjerk

On Jun 24, 2011 8:10 PM, "Kavyashree M" <hmkvsri at gmail.com> wrote:

Dear user,

When projection of a trajectory (50ns) on an eigen vector
was visualised in pymol, there was broken chains, but when
I projected the simulation (continued for 50 more ns ie.,
total 100ns) this broken chain was not seen why?

Thanking you
With Regards
M. Kavyashree

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