[gmx-users] ED - Projecting on an eigenvector

[Kavyashree M]

Hello Sir,

It is not a multimer sir, I was a single chain protein
which was intact while submitting to MD. It has no problem
when I project the 100ns trajectory on the vector but only
in case of half of this time -50ns, it has problem.

Thank you
With Regards
M.Kavyashree

On Sat, Jun 25, 2011 at 1:56 AM, Tsjerk Wassenaar <tsjerkw at gmail.com> wrote:

> Did you make the molecules whole and removed jumps (in case of a multimer)
> prior to filtering?
>
> Cheers,
>
> Tsjerk
>
> On Jun 24, 2011 8:10 PM, "Kavyashree M" <hmkvsri at gmail.com> wrote:
>
> Dear user,
>
> When projection of a trajectory (50ns) on an eigen vector
> was visualised in pymol, there was broken chains, but when
> I projected the simulation (continued for 50 more ns ie.,
> total 100ns) this broken chain was not seen why?
>
> Thanking you
> With Regards
> M. Kavyashree
>
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