[gmx-users] error in running pdb2gmx command

[rashi parihar]

thanx @justin..I have seen gromacs web site before posting..the solution of
my problem was written in gromacs website was " the atom names are expected
to match those found in the .rtp
file<http://www.gromacs.org/Documentation/File_Formats/.rtp_File> that
define the building block(s) in your structure". Now my question is that how
can i see or open the .rtp file of particular force field?

On Wed, Jun 29, 2011 at 5:24 PM, Justin A. Lemkul <jalemkul at vt.edu> wrote:

>
>
> rashi parihar wrote:
>
>>
>> HI all ..while running pdb2gmx command .I am getting error "Fatal error:
>> Atom CT in residue TYR 314 was not found in rtp entry TYR with 20 atoms
>> while sorting atoms" .what this error mean and how can I rectify this
>> problem?plz help me.
>>
>
> Please search the mailing list archive and Gromacs website before posting.
> Nearly all common errors are explained on the website or within a few
> seconds of searching.  For instance:
>
> http://www.gromacs.org/**Documentation/Errors#Atom_X_**
> in_residue_YYY_not_found_in_**rtp_entry<http://www.gromacs.org/Documentation/Errors#Atom_X_in_residue_YYY_not_found_in_rtp_entry>
>
> -Justin
>
>
>> --
>>  images[12]
>>  “Many Smiles Begin Because Of Another Smile . . . ."
>>  Regards,
>> Rashi
>>
>>
> --
> ==============================**==========
>
> Justin A. Lemkul
> Ph.D. Candidate
> ICTAS Doctoral Scholar
> MILES-IGERT Trainee
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justin<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin>
>
> ==============================**==========
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-- 

[image: images[12]]

“Many Smiles Begin Because Of Another Smile . . . ."

Regards,
Rashi
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