[gmx-users] How to find average protein structure.

Mark Abraham Mark.Abraham at anu.edu.au
Fri Mar 4 07:20:35 CET 2011

On 4/03/2011 4:40 PM, ajaniharesh at gmail.com wrote:
> Hi everybody,
> I am new user of gromacs. I had run simulation for 1ns and have obtained all required output files. After comparing and analysing the potential energy and rms .
> Now i want to know how to find out the average protein structure between 1ps to 1000ps.
> Please help me.

Manual section 7.4 describes all the tools by type. Then in chapter 8 
there's more detail, and the appendices yet more detail. Please start 
there :-)


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