[gmx-users] How to find average protein structure.

[Mark Abraham]

On 4/03/2011 4:40 PM, ajaniharesh at gmail.com wrote:
> Hi everybody,
>
> I am new user of gromacs. I had run simulation for 1ns and have obtained all required output files. After comparing and analysing the potential energy and rms .
>
> Now i want to know how to find out the average protein structure between 1ps to 1000ps.
>
> Please help me.

Manual section 7.4 describes all the tools by type. Then in chapter 8 
there's more detail, and the appendices yet more detail. Please start 
there :-)

Mark