[gmx-users] select in pymol after trjconv

[ZHAO Lina]

ATOM    397  N   ALA    48      35.480  52.940  57.920  1.00
0.00
ATOM    398  H   ALA    48      34.740  52.570  57.360  1.00
0.00
ATOM    399  CA  ALA    48      36.190  54.120  57.430  1.00
0.00
ATOM    400  CB  ALA    48      35.900  55.320  58.350  1.00
0.00
ATOM    401  C   ALA    48      37.690  53.840  57.260  1.00
0.00
ATOM    402  O1  ALA    48      38.120  52.590  57.580  1.00
0.00
ATOM    403  O2  ALA    48      38.460  54.860  56.810  1.00
0.00
ATOM    404  N   ASP     1       7.960  12.190  74.660  1.00
0.00
ATOM    405  H1  ASP     1       8.090  11.710  75.530  1.00
0.00
ATOM    406  H2  ASP     1       7.210  12.840  74.760  1.00
0.00
ATOM    407  H3  ASP     1       7.730  11.520  73.950  1.00
0.00
ATOM    408  CA  ASP     1       9.190  12.900  74.290  1.00
0.00
ATOM    409  CB  ASP     1      10.390  11.940  74.180  1.00
0.00
ATOM    410  CG  ASP     1      10.860  11.380  75.510  1.00
0.00
ATOM    411  OD1 ASP     1      10.420  11.850  76.560  1.00
0.00
ATOM    412  OD2 ASP     1      11.880  10.480  75.450  1.00
0.00
ATOM    413  C   ASP     1       9.000  13.630  72.970  1.00
0.00
ATOM    414  O   ASP     1       8.580  13.010  71.990  1.00  0.00



>>
>
> I'm guessing you have different chain identifiers, i.e. identical chains,
> just labeled A and B or something?


I got four chains. and the .pdb from trjconv do not distinguish those things
and don't show chain info.

Do you have some nice way to view .gro in pymol. (compare VMD I am a bit
familiar with pymol)

Thanks again,

lina
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