[gmx-users] select in pymol after trjconv

[ZHAO Lina]

On Mon, Mar 7, 2011 at 10:45 PM, Justin A. Lemkul <jalemkul at vt.edu> wrote:

>
>    I'm guessing you have different chain identifiers, i.e. identical
>>    chains, just labeled A and B or something?
>>
>>
>> I got four chains. and the .pdb from trjconv do not distinguish those
>> things and don't show chain info.
>>
>> Do you have some nice way to view .gro in pymol. (compare VMD I am a bit
>> familiar with pymol)
>>
>>
> Renumber using genconf.  You should be able to select consecutive residues
> in this way.  Otherwise, use a couple quick text editor tricks to write in
> chain identifiers to make selection easy.
>

genconf works so perfect here.

Thanks again!

lina



>
> -Justin
>
>  Thanks again,
>>
>> lina
>>
>>
>
> --
> ========================================
>
> Justin A. Lemkul
> Ph.D. Candidate
> ICTAS Doctoral Scholar
> MILES-IGERT Trainee
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
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