[gmx-users] OPLS force field for RNA nucleotides for protein RNA simulation

maria goranovic mariagoranovic at gmail.com
Tue Mar 8 11:26:21 CET 2011


I am running a protein-RNA simulation, and was unable to find OLPS-AA
topologies for RNA nucleotides. I am aware AMBER or CHARMM are the best
force fields for nucleotides, but my protein only simulations were done in
OPLS. Can I get any help with OPLS-AA topologies for, say, GMP compatible
with gromacs v. 4.5.3. If this is not available, I will try to make these,
but where can I find a topology in the first place?


Maria G.
Technical University of Denmark
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20110308/79613b04/attachment.html>

More information about the gromacs.org_gmx-users mailing list