[gmx-users] Topology

[Justin A. Lemkul]

chitrala kumaraswamynaidu wrote:
> Iam working with a NMR protein containing Zn ions. After generating 
> topology file using pdb2gmx, it is generating topology files containing 
> Protein and ions separately. How can i solve this.
> 

pdb2gmx -chainsep (-merge in old versions).

-Justin

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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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