[gmx-users] Nucleosides OPLS-AA

nishap.patel at utoronto.ca nishap.patel at utoronto.ca
Fri Mar 18 20:14:10 CET 2011


    I am trying to use OPLS-AA force field for simulating nucleosides  
eg. cytosine, adenosine etc. I found parameters for nucleotide bases  
(eg. 1-methylcytosine) but I haven't been able to find parameters for  
nucleosides. Does anyone know where I can find parameters for  
nucleotides for OPLS-AA (if they do exist?). A paper citation would be  


Nisha Patel

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