[gmx-users] g_clustsize and monomers

devicerandom devicerandom at gmail.com
Sun Mar 27 16:42:20 CEST 2011


I am trying to use g_clustsize to follow aggregation of peptides. I am 
currently using the following line:

g_clustsize -f my.trr -s ../my.tpr -nc nclusters.xvg -mol

Problem is, it actually counts monomers as clusters. I have a system 
with 125 separate molecules, and the number of clusters starts from 125.

What can I do to indicate a minimum cluster size?



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