[gmx-users] g_sas query

[Anirban Ghosh]

Hello Tsjerk,

Thanks for the reply.
But if I consider the ions also in the calculation group, then it is not
wrong. Right?

Thanks,

Anirban

On Sat, May 7, 2011 at 11:59 AM, Tsjerk Wassenaar <tsjerkw at gmail.com> wrote:

> Hey Anirban,
>
> I would consider the ions part of the solvent. But the procedure is right.
>
> Cheers,
>
> Tsjerk
>
> On May 7, 2011 7:35 AM, "Anirban Ghosh" <reach.anirban.ghosh at gmail.com>
> wrote:
>
> Hi ALL,
>
> I want to calculate the SASA of a protein embedded in a bilayer along with
> water and ions. So while using g_sas I understand that I need to supply all
> non-solvent atoms as calculation group and Protein as the output group. So I
> need to make a group with Protein+Lipid+Ions as the calculation group.
> Right?
> Thanks a lot in advance.
>
> Regards,
>
> Anirban
>
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
>
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20110507/85dfc683/attachment.html>