[gmx-users] g_current and output redirection

[Vitaly Chaban]

Thanks, Justin! Great solution.

On Tue, May 10, 2011 at 12:57 PM, Justin A. Lemkul <jalemkul at vt.edu> wrote:
>
>
> Vitaly Chaban wrote:
>>
>> I have a pure linux question. When using g_current and trying to
>> redirect its output to the file, e.g.
>>
>> g_current -temp $TEMPER -b $conduct_b -e $conduct_e << EOF >> output
>> 0
>> EOF
>>
>> only a part of output is written to the file ("output")
>>
>> Here is what is actually written to the file:
>>
>> Selected 0: 'System'
>> Average translational dipole moment M_J [enm] after 25001 frames
>> (|M|^2): 5.554790 -5.833042 -0.539783 (68.255722)
>> Average molecular dipole moment M_D [enm] after 25001 frames (|M|^2):
>> -0.414639 -0.356325 0.148187 (2.359227)
>>
>> Thus, the relevant data (sigma, dielectric constant) are missed. My
>> question is how to redirect all the output of "g_current" to my file.
>>
>
> echo 0 | g_current (options) &>outfile
>
> -Justin
>
>>
>> Thanks!
>>
>> Dr. Vitaly V. Chaban, Department of Chemistry
>> University of Rochester, Rochester, New York 14627-0216
>
> --
> ========================================
>
> Justin A. Lemkul
> Ph.D. Candidate
> ICTAS Doctoral Scholar
> MILES-IGERT Trainee
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
> ========================================
>