[gmx-users] CG database for POPC

Justin A. Lemkul jalemkul at vt.edu
Wed May 11 19:30:26 CEST 2011

Du Jiangfeng (BIOCH) wrote:
> Dear All, I require a CG database of POPC for coarse grained simulation. Can
> anyone give some suggestions for where to find it or how to make it by
> myself? PS: the structure file of POPC was from the Biocomputing, Department
> of Biological Sciences, University of Calgary. Thank you in advance.

The MARTINI site has a variety of coordinate and topology files you can likely
make use of:


I don't believe they have a pure POPC membrane, but they do have POPE, which can
easily be converted.

In the future, please do not respond to the entire digest, especially when
starting a new and entirely unrelated thread.  It confuses the archive horribly.
  It's bad enough, let's not make it any worse :)


> Jiangfeng Du, PhD Student Cardiovascular Research Institute Maastricht 
> Department of Biochemistry P.O. Box 616 Mobile: +31-681741859 FAX:
> +31-43-3884159 6200 MD Maastricht The Netherlands 
> ________________________________________


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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