[gmx-users] About -pbc option of trjconv

Anirban Ghosh reach.anirban.ghosh at gmail.com
Thu May 19 14:26:26 CEST 2011


I have a long simulation trajectory of 3 micro-seconds of multiple protein
monomers in a lipid bilayer.
Which -pbc option should be used with trjconv to process the trajectory
before carrying out any analysis? I am using -pbc nojump, is it correct? Or
should I use -pbc whole?
Thanks a lot in advance.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20110519/59804090/attachment.html>

More information about the gromacs.org_gmx-users mailing list