ndhumal at andrew.cmu.edu
Sat May 21 17:18:19 CEST 2011
I have a system with glucose + ionic liquids (cation + anion).
I am trying calculate distribution of cation and anion around glucose
molecule using g_sdf. I want to plot distribution of cation and anion is
same figure. I run the following command
g_sdf -f 3.trr -s 3.tpr -n glu-emi-dmp-128-no.ndx -mode 2 -o -r
I selected two atoms from glucose and 3rd and 4th groups are cation and
All the coordinates in refmol.gro are zero.
I am using gromacs version 4.0.7.
Why all the coordinates in refmol.gro are zero.
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