[gmx-users] what's the philosophy of -ci option in "genbox"?

牛继南 njn0516 at 163.com
Wed May 25 07:30:04 CEST 2011

Hi,gmx users:
Recently, I have a question——what's the philosophy of -ci option in "genbox"?
My understanding is that a molecule is randomly generated in the hole at first, then a new location around the molecule is generated according to  a random seed , then gmx checks whether solve or solute molecules will overlap, and so on. What is correct?


Sincerely yours 
Dr Ji-Nan Niu 
School of Materials Science and Engineering.
China University of Mining and Technology.
Jiangsu Province, XuZhou 221116
P. R. China
Email: njn0516 at cumt.edu.cn Phone: +86-13852039305
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