[gmx-users] Re: Error of installing gromacs v4.5.4
Hsin-Lin Chiang
jiangsl at phys.sinica.edu.tw
Thu May 26 19:27:58 CEST 2011
> ------------------------------
>
> Message: 4
> Date: Thu, 26 May 2011 13:15:40 -0400
> From: "Justin A. Lemkul" <jalemkul at vt.edu>
> Subject: Re: [gmx-users] Re: Error of installing gromacs v4.5.4
> To: Discussion list for GROMACS users <gmx-users at gromacs.org>
> Message-ID: <4DDE8ABC.9010108 at vt.edu>
> Content-Type: text/plain; charset=UTF-8; format=flowed
>
> Hsin-Lin Chiang wrote:
> > Hi,
> >
> > Thank you for your reply.
> > I'm not so good in computer.
> > I think the platform you ask me is "Linux", and kernel is 2.4.21-60.ELsmp
> > The compiler is gcc v3.2.3 in the machine in my institute.
> >
>
> The hardware specs are more significant here.  "cat /proc/cpuinfo" should
> provide the necessary information.  The exact configuration command you used
> would also be useful.
>
Hi,
So I think the information you need is
------
processor       : 0
vendor_id       : GenuineIntel
cpu family      : 6
model           : 15
model name      : Intel(R) Xeon(R) CPU            5160  @ 3.00GHz
stepping        : 6
cpu MHz         : 2992.635
cache size      : 4096 KB
physical id     : 0
siblings        : 2
core id         : 0
cpu cores       : 2
runqueue        : 0
fdiv_bug        : no
hlt_bug         : no
f00f_bug        : no
coma_bug        : no
fpu             : yes
fpu_exception   : yes
cpuid level     : 10
wp              : yes
flags           : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm nx lm
bogomips        : 5976.88
-----
Thank you for your opinion.
I'll ask out technique stuff update our gcc and try to install again.
Sincerely yours,
Hsin-Lin
The same content in processor 1 2 3
> Note that gcc 3.2.3 is extremely old, and often times new code will not compile
> properly with old compilers.  You should upgrade gcc to something more modern.
> Surely your system has a package manager that can upgrade such components.
>
> -Justin
>
> > Sincerely yours,
> > Hsin-Lin
> >  > Message: 1
> >  > Date: Thu, 26 May 2011 18:03:09 +0200
> >  > From: Szil?rd P?ll <szilard.pall at cbr.su.se>
> >  > Subject: Re: [gmx-users] Error of installing gromacs v4.5.4
> >  > To: Discussion list for GROMACS users <gmx-users at gromacs.org>
> >  > Message-ID: <BANLkTi=9v3+1Dnbjsmd6hna-ayFdpRbTOA at mail.gmail.com>
> >  > Content-Type: text/plain; charset=ISO-8859-1
> >  >
> >  > Hi Hsin-Lin,
> >  >
> >  > Your problem are caused by a missing header file which is included by
> >  > the nobonded SSE kernels which is indicated by the first error in your
> >  > output:
> >  >
> >  > nb_kernel400_ia32_sse.c:22:23: emmintrin.h: No such file or directory
> >  >
> >  > This header is needed for SSE and SSE2, but for some reason you don't
> >  > have it. What platform are you compiling on/for and what compiler are
> >  > you using?
> >  >
> >  > Alternatively, you can turn off acceleration and you'll be able to
> >  > compile the code, but it will run *much* slower than with the
> >  > accelerated kernels.
> >  >
> >  > --
> >  > Szil憳削
> >
>
> --
> ========================================
>
> Justin A. Lemkul
> Ph.D. Candidate
> ICTAS Doctoral Scholar
> MILES-IGERT Trainee
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
> ========================================
>
> ------------------------------
>
> --
> gmx-users mailing list
> gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
>
> End of gmx-users Digest, Vol 85, Issue 171
> ******************************************
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20110527/6bba5b35/attachment.html>
More information about the gromacs.org_gmx-users
mailing list