AW: Re: [gmx-users] where can I download POPC membrane file?

[albert]

I know this, but this file cannot be used because the atom name is quite different from gromacs CHARMM36 topol library.



At 2011-05-30，"Rausch, Felix" <frausch at ipb-halle.de> wrote:

Check this link given by another (unknown) mailing list user yesterday (Topic name:about POPC in Gromacs )!
 
http://terpconnect.umd.edu/~jbklauda/research/download.html


Von:gmx-users-bounces at gromacs.org im Auftrag von albert
Gesendet: So 29.05.2011 21:23
An: Discussion list for GROMACS users
Betreff: Re:Re: [gmx-users] where can I download POPC membrane file?


But I don't think it is pre-equilibrium POPC membrane...... and more over, the position from VMD is not pre-aligned with OPM database. It would be a great problem for putting our protein in the membrane......







At 2011-05-30，"Sergio Manzetti" <sergio.manzetti at vestforsk.no> wrote:
You can build it using VMD (VIsual Molecular Dynamics)




2011/5/30 albert<leuven at yeah.net>
Dear all:

  I would like to use charmm36 and POPC for membrane protein simulation. and I am wondering where can I download charmm36 pre-pribriumed POPC PDB and topol file for gromacs?

Thank you very much
Best

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