[gmx-users] where is Coul-LR?
Justin A. Lemkul
jalemkul at vt.edu
Tue Nov 8 22:13:19 CET 2011
Yun Shi wrote:
> Hello all,
>
> I understand that setting rcoulomb > rlist should give me Coul-LR from
> the .edr file. But I set rcoulomb = rlist since PME was used to
> calculate long range electrostatic interactions, and when I tried
> g_energy, I only have:
>
> 58 Coul-SR:Protein-LIG
> 59 LJ-SR:Protein-LIG 60
> LJ-LR:Protein-LIG
> 61 Coul-14:Protein-LIG 62
> LJ-14:Protein-LIG
>
> So where is Coul-LR? How should I get it?
>
As you correctly noted, Coul-LR is produced only when rcoulomb > rlist. You
cannot use such settings with PME.
-Justin
> Thanks,
> Yun
>
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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