[gmx-users] Normal Mode Analysis

James Starlight jmsstarlight at gmail.com
Wed Nov 9 20:48:16 CET 2011


I've another question about NMA.

1- As I understood the Sparce matrix method is used on default in case when
my reference structure consist of alot of atoms. If this true the output
Hessian.mtx would be in sparce format, wouldn't it ?


2- How I can convert output.mtx to the txt format ? As the consequence I
want to obtain something like this
http://www.csb.pitt.edu/prody/_downloads/oanm_hes.txt
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