[gmx-users] Remove water from membrane protein
alexbioinfo at yahoo.com
Sat Nov 12 11:46:23 CET 2011
I've inserted a protein in a DPPC layer and then I've solvated (after
modifying vdwradii.dat to avoid putting waters in wrong places).
How can I check and eventually remove waters still being in wrong places?
I've tried to load it in PdbViewer and in rasmol, but is veruy difficult to
distinguish waters in bilayer cavities.
I'd like some practical suggestion.
Thanks in advance
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