[gmx-users] dihedral angle

Nilesh Dhumal ndhumal at andrew.cmu.edu
Tue Nov 15 19:46:42 CET 2011


Hello,

I am trying to calculate the dihedral angle between four points.

I considered two planes (ABC & BCD) and calculate the dot products of two
normals (n1 and n2)to these plane.

theta=cos-1(n1.n2)

I compared theeta values of dihedral angle with ampac and some values are
negative. I am geting all positive value.

Any one knows how to calculate sign of dihedral angle.

Thanks

Nilesh














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