[gmx-users] Gromacs 3D maps
Mark.Abraham at anu.edu.au
Fri Nov 18 15:09:51 CET 2011
On 18/11/2011 12:24 AM, Alex wrote:
> Dear all,
> I'd like to transform an md gromacs trajectory in a 3d maps set.
> I mean that every 100ps, I need to export frame coordinates to a 3d map.
> Than I need to compare a map with the following.
> Could give me any advice about tools/software to use?
I don't know what you mean by a 3d map.
> Additionally I need to export the coordinate (x,y,z) of atom's protein, deriving
> from MD trajectory, to a matrix where each columns are frame number, 1-n
> atoms'positions (x,y,z coordinates).
> Any suggestion?
Check out manual section 7.4 for clues on what the tools do, then the
appropriate appendix section for more details. g_traj sounds like a good
place to start.
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