[gmx-users] Issue in membrane simulation How To

Gianluca Santoni gianluca.santoni at ibs.fr
Fri Nov 18 16:02:51 CET 2011

Hi all,
I was checking the how to on membrane proteins, and i think there is a 
little error in the section
"Increasing the size of the water segment in the z-direction"

The line
# |cat not_last_line.gro new_waters.gro last_line.gro > new_system.gro|
following the notation of the tutorial, recreates the original .gro 
file, with all the water molecule.
I think it should be replaced by

# |cat not_last_line.gro keep_these_waters.gro last_line.gro > new_system.gro|

I'm also not sure about the line just before, but I'm looking for a way 
to fix it. In any case, it doesn't seem to do its job properly.


Gianluca Santoni,
Institut de Biologie Structurale
41 rue Horowitz
Please avoid sending me Word or PowerPoint attachments.
See http://www.gnu.org/philosophy/no-word-attachments.html

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