[gmx-users] query regarding source of error

Tsjerk Wassenaar tsjerkw at gmail.com
Mon Nov 21 09:27:08 CET 2011

Hi Anushree,

I assume the rudeness of the last two sentences is unintentional. You
might benefit from reading
The problem only occurs if you generated a topology by yourself or
took  it from someone else. That would indicate that you're a
relatively advanced user that should understand the working of a
topology file and the meaning of charge groups. I fail to see how the
explanation could be unclear then. But the underlying error has been
discussed on the mailing list many times too. Please browse and read
the archive.



On Mon, Nov 21, 2011 at 9:08 AM, Anushree Tripathi
<anushritripathi at gmail.com> wrote:
> I m not getting the meaning of source of error mentioned in user
> i.e.,"charge groups encompass too many atoms.  Most charge groups should be
> less than 4 atoms or less".Let me know the exact meaning of this source of
> error.Reply me soon.
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Tsjerk A. Wassenaar, Ph.D.

post-doctoral researcher
Molecular Dynamics Group
* Groningen Institute for Biomolecular Research and Biotechnology
* Zernike Institute for Advanced Materials
University of Groningen
The Netherlands

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