[gmx-users] glutamic acid protonation

quantrum75 quantrum75 at yahoo.com
Tue Nov 22 05:32:03 CET 2011

Hi group.
I am having a sudden brainfart here and 
apologize for the silliness of the question. If the first amino acid of 
your protein is a Glutamic acid, what would you set the protonation 
status using the -ter option of pdb2gmx? The protein is in 0.1 molar 
NaCl solution. I know it is basic Biochem, but I am a bit stumped here.
Thanks for the favor of a reply.
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