[gmx-users] do_dssp segmentation fault

[Carsten Kutzner]

Hi,

On Nov 23, 2011, at 8:24 AM, Alex Jemulin wrote:

> Thanks for your reply
> Could you tell me the name of the file to download and how to install it?
Please follow the instructions at http://www.gromacs.org/Developer_Zone/Git/Basic_Git_Usage and
http://www.gromacs.org/Developer_Zone/Git/Git_Tutorial.

In short:
git clone git://git.gromacs.org/gromacs.git
git checkout --track -b release-4-5-patches origin/release-4-5-patches

If you are using CMake, you can then just install this like the normal
.tar.gz distributions from the gromacs home page. If you are using autotools,
do a ./bootstrap before the configure step.

Best,
  Carsten


>  
> Bests
> 
> Da: Carsten Kutzner <ckutzne at gwdg.de>
> A: Alex Jemulin <alexbioinfo at yahoo.com>; Discussion list for GROMACS users <gmx-users at gromacs.org> 
> Inviato: Martedì 22 Novembre 2011 13:25
> Oggetto: Re: [gmx-users] do_dssp segmentation fault
> 
> Dear Alex,
> 
> On Nov 22, 2011, at 9:28 AM, Alex Jemulin wrote:
> 
> > Dear all
> > I'm experiencing the following error in Gromacs 4.5 with do_dssp
> >  
> > Here is the command
> > do_dssp -f md.xtc -s md.tpr -o secondary-structure.xpm -sc secondary-structure.xvg -dt 10
> >  
> > give me the following error
> > segmentation fault
> >  
> > How can I fix it?
> I removed a segmentation fault in do_dssp a couple of weeks ago but this is
> post version 4.5.5. So you need to check out the current release-4-5-patches from
> the git server. I believe this will fix your problem.
> 
> Carsten
> 
> >  
> > Thank in ad
> > -- 
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> 
>