[gmx-users] NVT Equilibration
Alex Jemulin
alexbioinfo at yahoo.com
Sat Nov 26 07:01:38 CET 2011
Dear all
I'm studying a membrane protein. I've run equilibration with the follwing parameters - reference temperature =323k
integrator = md ; leap-frog integrator
nsteps = 50000 ; 2 * 50000 = 100 ps
dt = 0.002 ; 2 fs
tcoupl = V-rescale ; modified Berendsen thermostat
The system converged quickly to the reference value (after 2-3ps).
Should it converge more slowly and gradually? In the case how could fix it?
Thanks
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20111126/9e505b6a/attachment.html>
More information about the gromacs.org_gmx-users
mailing list