[gmx-users] Hydrophobic cores

[Justin A. Lemkul]

김현식 wrote:
> Dear Experts,
>  
> Hi,
>  
> Is there any tools in gromacs to get "Hydrophobic cores" of protein ?
>  
>  

I suppose that depends on what your definition is, but in all likelihood no, not 
directly.  A program like g_sas can give you nonpolar and polar surface areas as 
well as volumes and surface atoms, which, through crafty use of index groups, 
may provide you with something useful.

-Justin

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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